Motif View

Internal ID 17703826
Source Database TransTermHP TERM 8
Feature Type terminator
Name
Rho-independent transcription terminator TERM 8
Sequence CTGGGGCCGCCGCGAAGCGGCCCCAG
Look for more occurrences
Start 41976
End 42001
Strand +
Genomic Context
Replicon Pseudomonas mosselii DSM 17497 Q380DRAFT_scaffold00021.21_C, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TAAGGATCGTCGTCA(5' tail) CTGGGGCCGC(5' stem) CGCGAA(loop) GCGGCCCCAG(3' stem) TCGTTTTGTGCTTCA(3' tail). Confidence: 93. overlap 41974 41974

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685