Motif View

Internal ID 17703307
Source Database TransTermHP TERM 10
Feature Type terminator
Name
Rho-independent transcription terminator TERM 10
Sequence GCACCCTGCGAGGCGTACGCTTTCGCAGGGTGC
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Start 54814
End 54846
Strand +
Genomic Context
Replicon Pseudomonas mosselii DSM 17497 Q380DRAFT_scaffold00003.3_C, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GAGATGGTCAACCCG(5' tail) GCACCCTGCGA-GGC(5' stem) GTAC(loop) GCTTTCGCAGGGTGC(3' stem) TTTTACTTCGGAGAC(3' tail). Confidence: 100. gap 1

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685