Motif View

Internal ID 17688330
Source Database TransTermHP TERM 1053
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1053
Sequence GCCCGCAGCGACGGCGGGC
Look for more occurrences
Start 4554127
End 4554145
Strand +
Genomic Context
Replicon Pseudomonas poae RE*1-1-14, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GTCCGCCATGAAAAA(5' tail) GCCCGCAG(5' stem) CGA(loop) CGGCGGGC(3' stem) TTTTTCCTACAGGCA(3' tail). Confidence: 100. opp_overlap 4554127

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685