Motif View

Internal ID 17688014
Source Database TransTermHP TERM 608
Feature Type terminator
Name
Rho-independent transcription terminator TERM 608
Sequence CCCCGGCTTTCCGGGG
Look for more occurrences
Start 2824943
End 2824958
Strand -
Genomic Context
Replicon Pseudomonas poae RE*1-1-14, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CACTTACCAACGAAA(5' tail) CCCCGG(5' stem) AAAG(loop) CCGGGG(3' stem) TTTCGTCGCTGCCAC(3' tail). Confidence: 90. opp_overlap 2824943, overlap 2824938

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685