Motif View

Internal ID 17687851
Source Database TransTermHP TERM 365
Feature Type terminator
Name
Rho-independent transcription terminator TERM 365
Sequence CAGGCGCCGAAAGGCGCCTG
Look for more occurrences
Start 1604356
End 1604375
Strand +
Genomic Context
Replicon Pseudomonas poae RE*1-1-14, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GAGGATTGAATAAAA(5' tail) CAGGCGCC(5' stem) GAAA(loop) GGCGCCTG(3' stem) TTTTCGTTCCTGCGG(3' tail). Confidence: 100. opp_overlap 1604351 1604356

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685