Motif View

Internal ID 17687849
Source Database TransTermHP TERM 363
Feature Type terminator
Name
Rho-independent transcription terminator TERM 363
Sequence GAAAACAGGCGCCTTTCGGCGCCTGTTTTA
Look for more occurrences
Start 1604351
End 1604380
Strand -
Genomic Context
Replicon Pseudomonas poae RE*1-1-14, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GTGCAGAGGATTGAA(5' tail) TAAAACAGGCGCC(5' stem) GAAA(loop) GGCGCCTGTTTTC(3' stem) GTTCCTGCGGGCAGT(3' tail). Confidence: 91. opp_overlap 1604356, overlap 1604356

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685