Motif View

Internal ID 17687570
Source Database TransTermHP TERM 1614
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1614
Sequence GCCCGGCTCCGGCCGGGC
Look for more occurrences
Start 6631264
End 6631281
Strand -
Genomic Context
Replicon Pseudomonas protegens CHA0, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments ATCAGGCAAAAAAAT(5' tail) GCCCGGC(5' stem) CGGA(loop) GCCGGGC(3' stem) TTTTTTTCTTGCGCG(3' tail). Confidence: 100. opp_overlap 6631264, overlap 6631263

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685