Motif View

Internal ID 17686442
Source Database TransTermHP TERM 1388
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1388
Sequence GGGCGATCCATGTGGATCGCCC
Look for more occurrences
Start 5984891
End 5984912
Strand -
Genomic Context
Replicon Pseudomonas sp. UW4 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AGCCGATACAAAAAA(5' tail) GGGCGATCC(5' stem) ACAT(loop) GGATCGCCC(3' stem) TTTTTTCACCCGCTT(3' tail). Confidence: 100. opp_overlap 5984891

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685