Motif View

Internal ID 17685218
Source Database TransTermHP TERM 711
Feature Type terminator
Name
Rho-independent transcription terminator TERM 711
Sequence GCCCGGCACTAGGCCGGGC
Look for more occurrences
Start 3366836
End 3366854
Strand -
Genomic Context
Replicon Pseudomonas stutzeri RCH2 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCGGAAAAACGGAAA(5' tail) GCCCGGC(5' stem) CTAGT(loop) GCCGGGC(3' stem) TTTTTGCTTTCACGG(3' tail). Confidence: 91. opp_overlap 3366830 3366836, overlap 3366830

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685