Motif View

Internal ID 17684664
Source Database TransTermHP TERM 1415
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1415
Sequence GCGGCCGGCGCCCGGGCGGCGCCGGTCGC
Look for more occurrences
Start 5823291
End 5823319
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa RP73, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCGTCGACGGGAAAC(5' tail) GCGACCGGCGCC(5' stem) GCCCG(loop) GGCGCCGGCCGC(3' stem) CGTTTCAGAAGTCCA(3' tail). Confidence: 91. opp_overlap 5823290 5823290, overlap 5823290

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685