Motif View

Internal ID 17683725
Source Database TransTermHP TERM 1489
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1489
Sequence CGGCCATGGCGCGCCCCGGCGCGCCATGGCGG
Look for more occurrences
Start 6151065
End 6151096
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa B136-33, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCGTCACTGATCGTC(5' tail) CGGCCATGGCGCGC(5' stem) CCCG(loop) GCGCGCCATGGCGG(3' stem) TTCTCCCTTAGCGTC(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685