Motif View

Internal ID 17683675
Source Database TransTermHP TERM 1409
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1409
Sequence CCATGCCCCCGGCGGAACGCCGCCGGGGGCATGG
Look for more occurrences
Start 5868684
End 5868717
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa B136-33, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CAGGCAAGAAACAGA(5' tail) CCATGCCCCCGGCGG(5' stem) CGTT(loop) CCGCCGGGGGCATGG(3' stem) GATCAGGACTGGGCG(3' tail). Confidence: 100. overlap 5868682 5868680

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685