Motif View

Internal ID 17683585
Source Database TransTermHP TERM 1279
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1279
Sequence GCCGCCTTCGGGCGGC
Look for more occurrences
Start 5359180
End 5359195
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa B136-33, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGCGCGACGGAACAA(5' tail) GCCGCC(5' stem) TTCG(loop) GGCGGC(3' stem) TTTTTCATTTGTGGA(3' tail). Confidence: 100. opp_overlap 5359180, overlap 5359174

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685