Motif View

Internal ID 17683308
Source Database TransTermHP TERM 843
Feature Type terminator
Name
Rho-independent transcription terminator TERM 843
Sequence CGCCGGGCTGATGCCCGGCG
Look for more occurrences
Start 3641768
End 3641787
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa B136-33, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AGGTGGAAACGAAAA(5' tail) CGCCGGGC(5' stem) TGAT(loop) GCCCGGCG(3' stem) TTTTCATTGCGCGCC(3' tail). Confidence: 100. opp_overlap 3641768 3641763 3641762

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685