Motif View

Internal ID 17683300
Source Database TransTermHP TERM 835
Feature Type terminator
Name
Rho-independent transcription terminator TERM 835
Sequence GACCTCGCCGAGGCATCGGCGGGGTC
Look for more occurrences
Start 3627521
End 3627546
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa B136-33, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCTCTTTCGGAGAAA(5' tail) GACCCCGCCGA(5' stem) TGCC(loop) TCGGCGAGGTC(3' stem) TTCGCGTCTCGACTC(3' tail). Confidence: 100. opp_overlap 3627523

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685