Motif View

Internal ID 17678622
Source Database TransTermHP TERM 627
Feature Type terminator
Name
Rho-independent transcription terminator TERM 627
Sequence GGCGGGCTCTAGAGCCCGCC
Look for more occurrences
Start 2808703
End 2808722
Strand -
Genomic Context
Replicon Pseudomonas stutzeri DSM 4166 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TCAGGGAATAAAAAA(5' tail) GGCGGGCT(5' stem) CTAG(loop) AGCCCGCC(3' stem) TTTCGTTTTGCCTAC(3' tail). Confidence: 100. opp_overlap 2808703

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685