Motif View

Internal ID 17676612
Source Database TransTermHP TERM 51
Feature Type terminator
Name
Rho-independent transcription terminator TERM 51
Sequence GAGGCTTCACGGAAACGGAAGCCTC
Look for more occurrences
Start 295760
End 295784
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa DK2 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGGGCCTTTCTTTCA(5' tail) GAGGCTTCACG(5' stem) GAAA(loop) CG-GAAGCCTC(3' stem) TTTTTTCTGCCAGGG(3' tail). Confidence: 100. gap 1

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685