Motif View

Internal ID 17676489
Source Database TransTermHP TERM 1401
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1401
Sequence CCATGCCCCCGGCGGAGCGCCGCCGGGGGCATGG
Look for more occurrences
Start 5767696
End 5767729
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa M18 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CAGGCAAGAAACAGA(5' tail) CCATGCCCCCGGCGG(5' stem) CGCT(loop) CCGCCGGGGGCATGG(3' stem) GATCAGGACTGGGCG(3' tail). Confidence: 100. overlap 5767664 5767661 5767694 5767692

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685