Motif View

Internal ID 17676488
Source Database TransTermHP TERM 1400
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1400
Sequence TCCCATGCCCCCGGCGGAGCGCCGCCGGGGGCATGGTC
Look for more occurrences
Start 5767694
End 5767731
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa M18 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AACAGGCAAGAAACA(5' tail) GACCATGCCCCCGGCGG(5' stem) CGCT(loop) CCGCCGGGGGCATGGGA(3' stem) TCAGGACTGGGCGGC(3' tail). Confidence: 100. overlap 5767664 5767661 5767692 5767696

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685