Motif View

Internal ID 17675326
Source Database TransTermHP TERM 738
Feature Type terminator
Name
Rho-independent transcription terminator TERM 738
Sequence GCCGACCCACAAGTGGGTCGGC
Look for more occurrences
Start 3762446
End 3762467
Strand -
Genomic Context
Replicon Pseudomonas putida BIRD-1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments ACGGATTGTTAAGAA(5' tail) GCCGACCCA(5' stem) CTTG(loop) TGGGTCGGC(3' stem) TTTTTTATTGCCTTT(3' tail). Confidence: 91. opp_overlap 3762446

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685