Motif View

Internal ID 17675224
Source Database TransTermHP TERM 527
Feature Type terminator
Name
Rho-independent transcription terminator TERM 527
Sequence CCGGACTGATGCCTCGTGCGCAGTCCGG
Look for more occurrences
Start 2241069
End 2241096
Strand -
Genomic Context
Replicon Pseudomonas putida BIRD-1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TTCAAAGCACAAAAA(5' tail) CCGGACTG-CGC(5' stem) ACGAG(loop) GCATCAGTCCGG(3' stem) CCTTGATGGCGGGTT(3' tail). Confidence: 100. gap 1

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685