Motif View

Internal ID 17672173
Source Database TransTermHP TERM 450
Feature Type terminator
Name
Rho-independent transcription terminator TERM 450
Sequence CGCCGGGCTGAAGAGCCCGGCG
Look for more occurrences
Start 1962795
End 1962816
Strand +
Genomic Context
Replicon Pseudomonas fluorescens F113 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GATTCCCAAAAAAAA(5' tail) CGCCGGGCT(5' stem) GAAG(loop) AGCCCGGCG(3' stem) TTTTTTTATGCGTTG(3' tail). Confidence: 100. opp_overlap 1962795, overlap 1962784

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685