Motif View

Internal ID 17672168
Source Database TransTermHP TERM 445
Feature Type terminator
Name
Rho-independent transcription terminator TERM 445
Sequence CCCGCCGACGTTTCGCGATGTCGGCGGG
Look for more occurrences
Start 1961496
End 1961523
Strand +
Genomic Context
Replicon Pseudomonas fluorescens F113 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AAAACTCGAAAACAA(5' tail) CCCGCCGACGTT(5' stem) TCGC(loop) GATGTCGGCGGG(3' stem) TTTTTATTGCCTGCT(3' tail). Confidence: 100. opp_overlap 1961496 1961493

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685