Motif View

Internal ID 17671898
Source Database TransTermHP TERM 58
Feature Type terminator
Name
Rho-independent transcription terminator TERM 58
Sequence CCCGCCTTCTGGCGGG
Look for more occurrences
Start 193686
End 193701
Strand +
Genomic Context
Replicon Pseudomonas fluorescens F113 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCTGATCCACAAAAA(5' tail) CCCGCC(5' stem) TTCT(loop) GGCGGG(3' stem) TTTTTTCATATCGGC(3' tail). Confidence: 100. opp_overlap 193686

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685