Motif View

Internal ID 17671788
Source Database TransTermHP TERM 1357
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1357
Sequence GCCCGCCACGTAATAATCGTGGCGGGC
Look for more occurrences
Start 4994000
End 4994026
Strand -
Genomic Context
Replicon Pseudomonas mendocina NK-01 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GACGGCCACAGAAAA(5' tail) GCCCGCCACG(5' stem) ATTATTA(loop) CGTGGCGGGC(3' stem) ATGCGGTGAAGCGCG(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685