Motif View

Internal ID 17671600
Source Database TransTermHP TERM 1067
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1067
Sequence CGCCGCGACGAATCGCGGCG
Look for more occurrences
Start 4018222
End 4018241
Strand +
Genomic Context
Replicon Pseudomonas mendocina NK-01 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CTGCGCAAACAAAAA(5' tail) CGCCGCGA(5' stem) CGAA(loop) TCGCGGCG(3' stem) TTTTTGTTTGTGTGT(3' tail). Confidence: 100. opp_overlap 4018222, overlap 4018212

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685