Motif View

Internal ID 17671503
Source Database TransTermHP TERM 917
Feature Type terminator
Name
Rho-independent transcription terminator TERM 917
Sequence GGCCGCAATTGCGGCC
Look for more occurrences
Start 3529504
End 3529519
Strand -
Genomic Context
Replicon Pseudomonas mendocina NK-01 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCTGCAATCGAAAAA(5' tail) GGCCGC(5' stem) AATT(loop) GCGGCC(3' stem) TTTTCTCTATCTGCG(3' tail). Confidence: 100. opp_overlap 3529504 3529499 3529498

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685