Motif View

Internal ID 17669021
Source Database TransTermHP TERM 259
Feature Type terminator
Name
Rho-independent transcription terminator TERM 259
Sequence CGCCCCGAACCAGTCGGGGCG
Look for more occurrences
Start 1012122
End 1012142
Strand -
Genomic Context
Replicon Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGCTGAACAAGCAAA(5' tail) CGCCCCGA(5' stem) CTGGT(loop) TCGGGGCG(3' stem) TTTTGCTGTGTGGTG(3' tail). Confidence: 100. opp_overlap 1012117 1012122, overlap 1012117

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685