Motif View

Internal ID 17668454
Source Database TransTermHP TERM 910
Feature Type terminator
Name
Rho-independent transcription terminator TERM 910
Sequence CGCCCGGGCGACCTCGCCTGGGCG
Look for more occurrences
Start 3938158
End 3938181
Strand -
Genomic Context
Replicon Pseudomonas putida GB-1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments ACTCGGATACAAAAA(5' tail) CGCCCAGGCG(5' stem) AGGT(loop) CGCCCGGGCG(3' stem) TTTGACGGGGCGGTA(3' tail). Confidence: 100. opp_overlap 3938158

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685