Motif View

Internal ID 17668311
Source Database TransTermHP TERM 635
Feature Type terminator
Name
Rho-independent transcription terminator TERM 635
Sequence GCCGACCCACTTGTGGGTCGGC
Look for more occurrences
Start 2162870
End 2162891
Strand -
Genomic Context
Replicon Pseudomonas putida GB-1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments ACAGGCAATAAAAAA(5' tail) GCCGACCCA(5' stem) CAAG(loop) TGGGTCGGC(3' stem) TTCTTAACAATCCGT(3' tail). Confidence: 100. opp_overlap 2162870

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685