Motif View

Internal ID 17667129
Source Database TransTermHP TERM 2017
Feature Type terminator
Name
Rho-independent transcription terminator TERM 2017
Sequence CCGCCTCCACGTCGAGTGGAGGCGG
Look for more occurrences
Start 6344345
End 6344369
Strand -
Genomic Context
Replicon Pseudomonas fluorescens Pf0-1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TGCGTTGAAAAAAAA(5' tail) CCGCCTCCAC(5' stem) TCGAC(loop) GTGGAGGCGG(3' stem) TTTCGATAAAGACGT(3' tail). Confidence: 100. opp_overlap 6344345

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685