Motif View

Internal ID 17666714
Source Database TransTermHP TERM 1512
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1512
Sequence GCCGCATGACTTTTGGGTTGTGCGGC
Look for more occurrences
Start 4871378
End 4871403
Strand +
Genomic Context
Replicon Pseudomonas fluorescens Pf0-1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGTTGATAAAACAAA(5' tail) GCCGCATGACT(5' stem) TTTG(loop) GGTTGTGCGGC(3' stem) TTTTTTGTGTCTGGT(3' tail). Confidence: 100. opp_overlap 4871378, overlap 4871367

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685