Motif View

Internal ID 17666633
Source Database TransTermHP TERM 1405
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1405
Sequence CCCGCCGAGGCTTGCGCCGTGGCGGG
Look for more occurrences
Start 4537286
End 4537311
Strand -
Genomic Context
Replicon Pseudomonas fluorescens Pf0-1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCGGGCAATAAAAAA(5' tail) CCCGCCACGGC(5' stem) GCAA(loop) GCCTCGGCGGG(3' stem) TTTTGTCTTCCAGCT(3' tail). Confidence: 100. opp_overlap 4537286 4537281

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685