Motif View

Internal ID 17666585
Source Database TransTermHP TERM 1351
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1351
Sequence GCGCTGAGAATCTCAGCGC
Look for more occurrences
Start 4375583
End 4375601
Strand -
Genomic Context Located within gene [Pfl01_3868]
Replicon Pseudomonas fluorescens Pf0-1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGACAAGTTTGAAAA(5' tail) GCGCTGAG(5' stem) ATT(loop) CTCAGCGC(3' stem) TTGTTCAGTCACGTC(3' tail). Confidence: 100. opp_overlap 4375583

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685