Motif View

Internal ID 17666088
Source Database TransTermHP TERM 700
Feature Type terminator
Name
Rho-independent transcription terminator TERM 700
Sequence GCCCGGCTTAGGCCGGGC
Look for more occurrences
Start 1975872
End 1975889
Strand +
Genomic Context
Replicon Pseudomonas fluorescens Pf0-1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCCGCTACGAGAAAA(5' tail) GCCCGGC(5' stem) TTAG(loop) GCCGGGC(3' stem) TTTTCTTTGCCTGCG(3' tail). Confidence: 100. opp_overlap 1975872, overlap 1975867

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685