Motif View

Internal ID 17666035
Source Database TransTermHP TERM 627
Feature Type terminator
Name
Rho-independent transcription terminator TERM 627
Sequence GGCCACCTTCGGGTGGCC
Look for more occurrences
Start 1810961
End 1810978
Strand +
Genomic Context
Replicon Pseudomonas fluorescens Pf0-1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TGCTCCAGCAACAAA(5' tail) GGCCACC(5' stem) TTCG(loop) GGTGGCC(3' stem) TTTGTCGTTTCCGGC(3' tail). Confidence: 95. opp_overlap 1810961 1810957, overlap 1810957 1810954

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685