Motif View

Internal ID 17665356
Source Database TransTermHP TERM 649
Feature Type terminator
Name
Rho-independent transcription terminator TERM 649
Sequence CGATGATGCCCGTATCCCCGGATACGGGCATTTTCG
Look for more occurrences
Start 2969078
End 2969113
Strand -
Genomic Context
Replicon Pseudomonas stutzeri A1501 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TCGCGCAGCCGGAAA(5' tail) CGAAAATGCCCGTATC(5' stem) CGGG(loop) GATACGGGCATCATCG(3' stem) ACGCGTGTCGCTCGA(3' tail). Confidence: 100. overlap 2969045 2969084

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685