Motif View

Internal ID 17665272
Source Database TransTermHP TERM 519
Feature Type terminator
Name
Rho-independent transcription terminator TERM 519
Sequence TGCCCCGGGTGCTGCAGCGCCGCGGGGCA
Look for more occurrences
Start 2361163
End 2361191
Strand +
Genomic Context
Replicon Pseudomonas stutzeri A1501 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CTGGTCGATCACTTC(5' tail) TGCCCCG-GGTGC(5' stem) TGCA(loop) GCGCCGCGGGGCA(3' stem) TTTTTTTGCCGCTCG(3' tail). Confidence: 100. gap 1, overlap 2361169 2361169

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685