Motif View

Internal ID 17665242
Source Database TransTermHP TERM 470
Feature Type terminator
Name
Rho-independent transcription terminator TERM 470
Sequence CGCCGGGAGACCGGCG
Look for more occurrences
Start 2197692
End 2197707
Strand +
Genomic Context
Replicon Pseudomonas stutzeri A1501 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AGAGCCATAAAAAAA(5' tail) CGCCGG(5' stem) GAGA(loop) CCGGCG(3' stem) TTTTTTCTTCCTAGC(3' tail). Confidence: 100. opp_overlap 2197692, overlap 2197685

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685