Motif View

Internal ID 17663126
Source Database TransTermHP TERM 1292
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1292
Sequence CGCCCGGGCCGGCTTCCAGCTGTCCCGGGCG
Look for more occurrences
Start 5629439
End 5629469
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa PA7 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AAAAAAAGCGACAAA(5' tail) CGCCCGGGACAGCT(5' stem) GGA(loop) AGCCGGCCCGGGCG(3' stem) CTGTGGTTACGCACT(3' tail). Confidence: 100. opp_overlap 5629438, overlap 5629431

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685