Motif View

Internal ID 17662548
Source Database TransTermHP TERM 375
Feature Type terminator
Name
Rho-independent transcription terminator TERM 375
Sequence CAAGCCCCGCAACTGGCGGGGCTTCG
Look for more occurrences
Start 1671948
End 1671973
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa PA7 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AACTGGCAGAAAAAA(5' tail) CGAAGCCCCGC(5' stem) CAGTT(loop) GCGGGGCTT-G(3' stem) CTTGCGTGCCGGCGG(3' tail). Confidence: 100. gap 1, opp_overlap 1671952, overlap 1671952

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685