Motif View

Internal ID 17661096
Source Database TransTermHP TERM 1213
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1213
Sequence GGGAGACCGGAGCGGTCTCCC
Look for more occurrences
Start 5279659
End 5279679
Strand -
Genomic Context
Replicon Pseudomonas syringae pv. phaseolicola 1448A chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CAAAGTTTACAGACA(5' tail) GGGAGACCG(5' stem) CTC(loop) CGGTCTCCC(3' stem) TGACCCGCGTCATGC(3' tail). Confidence: 100. overlap 5279657 5279648

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685