Motif View

Internal ID 17660960
Source Database TransTermHP TERM 1021
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1021
Sequence GCCCGCTCTCGATTGAGGCGGGC
Look for more occurrences
Start 4449791
End 4449813
Strand -
Genomic Context
Replicon Pseudomonas syringae pv. phaseolicola 1448A chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGTTGCAATGAAAAA(5' tail) GCCCGC-CTC(5' stem) AATC(loop) GAGAGCGGGC(3' stem) TTTTTCTTGTGCGTA(3' tail). Confidence: 100. gap 1, opp_overlap 4449791

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685