Motif View

Internal ID 17660318
Source Database TransTermHP TERM 27
Feature Type terminator
Name
Rho-independent transcription terminator TERM 27
Sequence CCCGTTTCGACGGG
Look for more occurrences
Start 104645
End 104658
Strand -
Genomic Context
Replicon Pseudomonas syringae pv. phaseolicola 1448A chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TCCAGAACAAAAAAA(5' tail) CCCGT(5' stem) CGAA(loop) ACGGG(3' stem) CTTTTTTTGTCTGTT(3' tail). Confidence: 100. opp_overlap 104645 104644 104632, overlap 104637

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685