Motif View

Internal ID 17658987
Source Database TransTermHP TERM 896
Feature Type terminator
Name
Rho-independent transcription terminator TERM 896
Sequence GCAGCCTCGGCTGC
Look for more occurrences
Start 4120876
End 4120889
Strand -
Genomic Context
Replicon Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TCAAAAAGCAAAAAA(5' tail) GCAGC(5' stem) CGAG(loop) GCTGC(3' stem) TCATCTGTTGGTTCT(3' tail). Confidence: 100. opp_overlap 4120876 4120869

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685