Motif View

Internal ID 17658689
Source Database TransTermHP TERM 410
Feature Type terminator
Name
Rho-independent transcription terminator TERM 410
Sequence GGGCTGCGATTGGCAGCCC
Look for more occurrences
Start 1829833
End 1829851
Strand +
Genomic Context
Replicon Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TTTTGCGATGAACAA(5' tail) GGGCTGC(5' stem) GATTG(loop) GCAGCCC(3' stem) TCTTTTGTTGCAAAA(3' tail). Confidence: 90. opp_overlap 1829833, overlap 1829831

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685