Motif View

Internal ID 17658552
Source Database TransTermHP TERM 197
Feature Type terminator
Name
Rho-independent transcription terminator TERM 197
Sequence GAGGCCTGCGGGCCTC
Look for more occurrences
Start 892849
End 892864
Strand -
Genomic Context
Replicon Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TGATGCATAAAAAAA(5' tail) GAGGCC(5' stem) CGCA(loop) GGCCTC(3' stem) TTTTCTGAGCTAGCT(3' tail). Confidence: 100. opp_overlap 892849

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685