Motif View

Internal ID 17657571
Source Database TransTermHP TERM 1538
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1538
Sequence CCGCTCGGGACCGCTGCGAATGCCCGGCGCTGCCGGGCATTCGCGTTTATCCTCCGCGC
Look for more occurrences
Start 6326261
End 6326319
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa UCBPP-PA14 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GAACAGACGGAAAAA(5' tail) GCGCGGAGGATAAACGCGAATGCCCGGC(5' stem) AGC(loop) GCCGGGCATTCGCAGCGGTCCCGAGCGG(3' stem) GCCTTGGGGGTCAGC(3' tail). Confidence: 100. overlap 6326275 6326276

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685