Motif View

Internal ID 17657390
Source Database TransTermHP TERM 1278
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1278
Sequence GGGCGCCTCCGGCGCCC
Look for more occurrences
Start 5441666
End 5441682
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa UCBPP-PA14 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TGCCCACATGAAAAA(5' tail) GGGCGCC(5' stem) GGA(loop) GGCGCCC(3' stem) TTTTTCATACCGTTG(3' tail). Confidence: 100. opp_overlap 5441654 5441666

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685