Motif View

Internal ID 17657091
Source Database TransTermHP TERM 823
Feature Type terminator
Name
Rho-independent transcription terminator TERM 823
Sequence CGCCACGCCCGCTCCTGCCGGCGTGGCG
Look for more occurrences
Start 3665069
End 3665096
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa UCBPP-PA14 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CAGGCCGTCCCGAAA(5' tail) CGCCACGCCCGC(5' stem) TCCT(loop) GCCGGCGTGGCG(3' stem) TTTTCGCAAGCGCGG(3' tail). Confidence: 100. opp_overlap 3665069

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685